PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6DL_AB95B0CE0.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family WRKY
Protein Properties Length: 559aa    MW: 58550.3 Da    PI: 4.7206
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6DL_AB95B0CE0.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.81.4e-30314373159
                            ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                            ++Dg++WrKYGqK+ kg+++pr+YYrCt a  Cpv+k+v+r++ed +++++tYeg+Hnh+
  Traes_6DL_AB95B0CE0.1 314 MNDGCQWRKYGQKVAKGNPCPRAYYRCTVApACPVRKQVQRCQEDMSILITTYEGTHNHP 373
                            58***************************99****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.2E-32299375IPR003657WRKY domain
SuperFamilySSF1182906.41E-27307375IPR003657WRKY domain
PROSITE profilePS5081128.162309375IPR003657WRKY domain
SMARTSM007744.7E-37314374IPR003657WRKY domain
PfamPF031068.7E-27315373IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 559 aa     Download sequence    Send to blast
MSSSKRKRAD IDLERRDDDV DDGSGDHQPG EAAPRVQKEG QIKEGEAQAK EVVEVVVDRG  60
GDGSKEEIKC GTQQGGVMEE DKQSPAASAG NDGADGIDDE ESGGGGTRAE EEHMVEAAPG  120
DGDGDHDHTA MAQDELSTMQ EEMEKMKEEN KMLRRVVDRT VRDYYELQTK LAAYQKQPAD  180
QEPKETEVFL SLGGTAPAAA VAEAKSKEEQ AALRPSVGSD DTDDGREGLG LSLSLRTSSY  240
EDEARRDVVD GGAPDIVSDV GKARGYALLE SSRMSPPASG DLAAAGGIGS QQGVNAANRK  300
TRVSVRVRCQ GPTMNDGCQW RKYGQKVAKG NPCPRAYYRC TVAPACPVRK QVQRCQEDMS  360
ILITTYEGTH NHPLPVGATA MASTATAGAG AATFMLLSST SSDAAVSGGP PPASSSYLSP  420
YLQLNSSSQY HSSASPLMSG NMGGGGAQHL SMFGHSSALA SQPATLLKYP WPPNPSHGGA  480
AGLGGGKRPF WGTGGVDDVR PTPLPDNAGT MASDPNQFSA AIATAISNVI GKDGQATRSK  540
EGESSNKWGV VVESLPPHE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-21301377176WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3632470.0AK363247.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2013L09.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012701133.11e-175PREDICTED: LOW QUALITY PROTEIN: probable WRKY transcription factor 61
TrEMBLW5GYP70.0W5GYP7_WHEAT; Uncharacterized protein
STRINGMLOC_71463.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80223446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68150.13e-49WRKY DNA-binding protein 9
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]